Skip to content

README is outdated

The readme gives references to Dropseq, which I don't think is supported by this pipeline any longer (or at least the config file is not there):
https://gitlab.gwdg.de/loosolab/software/scRNAseq.preprocessing#quickstart-for-dropseq-based-data

The documentation here seems up to date: https://gitlab.gwdg.de/loosolab/software/scRNAseq.preprocessing/-/blob/master/book/toc.md

We should get an overview what types of input are supported, and update accordingly.

To upload designs, you'll need to enable LFS and have an admin enable hashed storage. More information