Skip to content

Report notebook does not run last

The report notebook should be last but it runs before the general notebooks.

From the CI/CD notebook job:

--------------------------------------- RNA ---------------------------------------
Notebook directory: /builds/loosolab/software/sc_framework/scripts/../rna_analysis/notebooks/
Notebooks: ['01_assembling_anndata.ipynb', '02_QC_filtering.ipynb', '03_normalization_batch_correction.ipynb', '04_clustering.ipynb', '0A1_ligand_receptor.ipynb', '0A2_ligand_receptor_differences.ipynb', '0B_velocity_analysis.ipynb', '99-report.ipynb', 'annotation.ipynb', 'group_markers.ipynb', 'GSEA.ipynb', 'prepare_for_cellxgene.ipynb']
Edited by Hendrik Schultheis